ATLAS Pathology: A Unified Operating System for Digital Pathology

ATLAS Pathology: A Unified Operating System for Digital Pathology

ATLAS Pathology is a digital pathology and image-analysis platform serving preclinical research and life sciences organizations operating under GLP and FDA 21 CFR Part 11 requirements.

The company’s mission is to help labs reduce turnaround time, improve data integrity, and scale pathology workflows, by embedding AI-assisted analysis into compliant, end-to-end systems rather than selling standalone AI algorithms.

THE CLIENT

Atlas Pathology (name changed under NDA)

Date

Founding Product Designer

Industry

8 months

Scope of work

Enterprise SaaS

Product Design

Web App Tool

My Role

My Role

I worked as the sole Product Designer, partnering closely with product, engineering, and QA.

Scope of work

  • User research & workflow analysis

  • Information architecture

  • Interaction & visual design

  • Prototyping & usability testing

  • Design system alignment

  • Product strategy support

This was a live commercial product. [Name changed under NDA]



The Problem

The Problem

One Study, 2,000 Slides & "Zero" Connection!

In most pathology labs, reviewing a single study required juggling:


Research & Discovery

Research & Discovery

Research Methods


  • Interviews with Study Directors, Pathologists, and Technicians

  • Workflow walkthroughs of study setup and review

  • Analysis of existing spreadsheets, folder structures, and SOPs

  • Competitive review of digital pathology tools

  • Early usability testing with low-fidelity flows




Reframing the challenge


Design Decision

User problem #1

Technicians manually mapped thousands of slides using Excel which was slow and error-prone.

Proposed solution

Design a visual mapping wizard to guide study setup and reduce manual data-entry errors.

  • Batch cards represent barcode ranges

  • Drop zones represent biological groupings

User problem #2

FDA 21 CFR Part 11 requires logging every meaningful action, but modal confirmations break focus.

Proposed solution

Design compliance workflows that are continuously enforced without requiring explicit user intervention.

  • Silent audit logging in the background

  • Dedicated compliance dashboard for governance

  • Clear separation between: Operational alerts (main dashboard) and Compliance oversight (compliance dashboard)

User problem #3

While AI models could surface potential patterns and regions of interest, pathologists were hesitant to rely on them.

Proposed solution

Introduce AI as a transparent decision-support layer that assists pathologists without replacing clinical judgment.

  • Designed AI as transparent decision support, not automated decision-making

  • Introduced confidence indicators to communicate uncertainty instead of absolute predictions

  • Used visual overlays mapped directly to tissue regions to make AI reasoning inspectable

  • Preserved human authority with clear options to confirm, question, or override AI findings



Reflections & Learnings

This project reinforced the importance of sequencing in complex systems addressing foundational workflow, data integrity, and compliance challenges before introducing advanced capabilities like AI.

Designing for regulated environments required balancing usability with accountability, and ensuring that trust was built into the system rather than added on top.


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